References to packages – Genchek, Genowiz, Optgene and iRNAchek


Our very first software package, Genchek has a few publications in its name. Here is an incomplete list. Will be completed at some point. I will also add references to Optgene and iRNAchek soon.

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2012

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[PDF] Functional annotation of expressed sequence tags of Papaver somniferum

A Priya, H Tripathi, DK Yadav, F Khan, V Gupta… – Plant Omics, 2012 – pomics.com
 sequences retrieved from dbEST were cleaned, clustered and assembled through PHRED (Ewing
and Green, 1998), RepeatMasker, Cross-Match, PHRAP and CAP3 (Huang and Madan, 1999)
softwares with the help of Gencheck software (Ocimum Biosolutions, USA; www 

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2011

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HTML] A review on worldwide essential software resources in pharmacy

PY Mali, SJ Panchal – Chronicles of Young Scientists, 2011 – cysonline.org
 history recording, etc. http://www.applied-maths.com/gelcompar/gelcompar.htm Genchek
It is an integral database system that can used to access, store, organize and retrieve
DNA, protein and vector sequences. http://www.ocimumbio 

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2009

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[HTML] TLR2 polymorphisms, Arg753Gln and Arg677Trp, are not associated with increased burden of tuberculosis in Indian patients

D Biswas, SK Gupta, G Sindhwani… – BMC research …, 2009 – biomedcentral.com
 of Biochemistry, University of Delhi, India. To sense the SNPs in the selected DNA
sequences, multiple sequence alignment was performed using built in interface for ClustalW
[8] in Genchek software version 2.4.1.5 from Ocimum Biosolutions

[HTML] BMC research notes Volume: 2 ISSN: 1756-0500 ISO Abbreviation: BMC Res Notes Publication Date: 2009

D Biswas, SK Gupta, G Sindhwani, A Patras – Detail: – biomedsearch.com
 of Biochemistry, University of Delhi, India. To sense the SNPs in the selected DNA
sequences, multiple sequence alignment was performed using built in interface for ClustalW [
8 ] in Genchek software version 2.4.1.5 from Ocimum Biosolutions
Related articles All 2 versions Cite

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2008

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[PDF] Subtype selectivity in phosphodiesterase 4 (PDE4): a bottleneck in rational drug design

RD Design – Current Pharmaceutical Design, 2008 – 203.199.182.73
Page 1. 3854 Current Pharmaceutical Design, 2008,14, 3854-3872 Subtype Selectivity
in Phosphodiesterase 4 (PDE4): A Bottleneck in Rational Drug Design P. Srivani1,
D. Usharani2’3, Eluvathingal D. Jemmis2′” and G. Narahari 

Design of microarray probes for detection of mutations

P Almeida, L Carreto, JL Oliveira – … , 2008. BIOTECHNO’08. …, 2008 – ieeexplore.ieee.org
 efficiency and robustness, ie finding the best set of probes for specific hybridization conditions
[4]. Several software packages already exist to assist on the design of microarray probes: AlleleID
[5], Oligowiz [6], Gencheck [7], Oligo  [7] OcimumBiosolutions, “GenChek,” GenChek

Visual software tools for bioinformatics

T Arndt – Journal of Visual Languages & Computing, 2008 – Elsevier
 View Within Article. Genchek [7] (available for Linux, Mac, Windows and Unix) is a comprehensive
software suit. It has support for several operations on DNA and proteins.  Gencheck is shown in Fig. 10. 

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2007

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Genomic and morphological features of a banchine polydnavirus: comparison with bracoviruses and ichnoviruses

R Lapointe, K Tanaka, WE Barney, JB Whitfield… – Journal of …, 2007 – Am Soc Microbiol
 University of Kentucky. The DNA sequences were first edited to remove vector
sequences and then assembled using either SeqMan II (Lasergene DNAStar) or
Genchek v. 2061 (Ocimum Biosolutions). Contigs were built using 

< i> Pisum sativum contains a factor with strong homology to eIF5B

S Rasheedi, S Ghosh, M Suragani, N Tuteja… – Gene, 2007 – Elsevier
 Multiple sequence alignments and phylogenetic tree analysis were performed by
CLUSTALW version1.74 (Thompson et al., 1994) and Genchek™ sequence analysis
software package (Ocimum Biosolutions, India). Hydrophilicity 
K Tanaka, R Lapointe, WE Barney, AM Makkay… – Virology, 2007 – Elsevier
 The DNA sequences were first edited to remove vector sequences and then assembled
using either SeqMan II (Lasergene DNAStar) or Genchek v. 2061 (Ocimum
Biosolutions). Contigs were built with a minimum of 50 nt overlap 

Automatic design of microarray probes for mutations detection

PRSG Almeida – 2007 – ria.ua.pt
 26 3.3. Genchek ….. 26 3.4.  27 Figure 3.2- OligoWiz software. …. 28 Figure 3.3 –
Genchek software….. 28 Figure 3.4 – OligoDesign software. 

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2005

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Growth of Indian biotech companies, in the context of the international biotechnology industry

U Palnitkar – Journal of commercial biotechnology, 2005 – ingentaconnect.com
 Ocimum Biosolutions Labronica Inc., USA Global marketing of Biotracker-LIMS United
Bioinformatics Inc., Canada Marketing rights for Gencheck and Biotracker Hospital for Joint
Diseases Orthopaedic Institute (HJD), New York Research into musculoskeletal disease using 

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